Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRERF1Transcriptional regulating factor 1. (1076 aa)    
Predicted Functional Partners:
DNTTIP1
Deoxynucleotidyltransferase terminal interacting protein 1.
    
 
 0.994
ENSPCAP00000005800
annotation not available
    
 
 0.955
ENSPCAP00000013626
annotation not available
      
 0.852
TAF8
TATA-box binding protein associated factor 8.
      
 0.769
HDAC1
Histone deacetylase 1.
    
 
 0.751
HDAC2
Histone deacetylase 2.
    
 
 0.751
CYP39A1
Cytochrome P450 family 39 subfamily A member 1.
      
 0.692
TXLNA
Taxilin alpha.
      
 0.647
DENND2D
DENN domain containing 2D.
      
 0.642
IKZF2
IKAROS family zinc finger 2.
    
 0.623
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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