Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZUP1Zinc finger containing ubiquitin peptidase 1. (572 aa)    
Predicted Functional Partners:
UBC
Ubiquitin C.
    
 
 0.967
RPA1
Replication protein A1.
    
   0.954
UBR5
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.919
RPA3
Replication protein A3.
    
   0.910
USP11
Ubiquitin specific peptidase 11.
    
 
 0.875
TCEAL1
Transcription elongation factor A like 1.
    
   0.873
NSA2
NSA2 ribosome biogenesis factor.
    
   0.807
USP19
Ubiquitin specific peptidase 19.
    
 
 0.706
USP1
Ubiquitin specific peptidase 1.
      
 0.692
USP30
Ubiquitin specific peptidase 30.
      
 0.692
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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