Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3DSemaphorin 3D. (775 aa)    
Predicted Functional Partners:
NRP1
Neuropilin 1.
    
 0.946
SEMA3F
Semaphorin 3F.
     
  0.840
SEMA3G
Semaphorin 3G.
     
  0.840
PLXND1
Plexin D1.
    
 0.741
SEMA3E
Semaphorin 3E.
     
  0.670
NRP2
Neuropilin 2.
    
 0.623
MST1R
Macrophage stimulating 1 receptor.
   
 0.623
MET
MET proto-oncogene, receptor tyrosine kinase.
   
 0.623
METTL4
Methyltransferase like 4.
      
 0.586
ENSPCAP00000003828
annotation not available
      
 0.584
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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