STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen type XVI alpha 1 chain. (1605 aa)    
Predicted Functional Partners:
ENSPCAP00000014868
annotation not available
    
 0.766
ENSPCAP00000007645
annotation not available
   
0.763
ENSPCAP00000009778
annotation not available
   
 0.709
COL5A2
Collagen type V alpha 2 chain.
  
0.672
TEP1
Telomerase associated protein 1.
    
 0.663
SERPINH1
Serpin family H member 1.
   
 0.659
FBN1
Fibrillin 1.
   
 0.658
COL3A1
Collagen type III alpha 1 chain.
  
0.647
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.643
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.643
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.