FAM13B protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

FAM13B

Family with sequence similarity 13 member B. (822 aa)

Predicted Functional Partners:

ENSPCAP00000010648

0.628

ENSPCAP00000006587

0.589

SH3PXD2A

0.589

CYFIP2

0.580

RETREG1

0.573

DNAJC18

0.565

ASAP1

0.565

RAD54L2

0.564

ENSPCAP00000001768

0.560

GFRA3

0.558

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASAP1	FAM13B	ENSPCAP00000010962	ENSPCAP00000004263	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	Family with sequence similarity 13 member B.	0.565
CYFIP2	ENSPCAP00000010648	ENSPCAP00000012412	ENSPCAP00000010648	Cytoplasmic FMR1 interacting protein 2.	annotation not available	0.774
CYFIP2	FAM13B	ENSPCAP00000012412	ENSPCAP00000004263	Cytoplasmic FMR1 interacting protein 2.	Family with sequence similarity 13 member B.	0.580
CYFIP2	SH3PXD2A	ENSPCAP00000012412	ENSPCAP00000007755	Cytoplasmic FMR1 interacting protein 2.	SH3 and PX domains 2A.	0.651
DNAJC18	ENSPCAP00000006587	ENSPCAP00000006618	ENSPCAP00000006587	DnaJ heat shock protein family (Hsp40) member C18.	annotation not available	0.573
DNAJC18	FAM13B	ENSPCAP00000006618	ENSPCAP00000004263	DnaJ heat shock protein family (Hsp40) member C18.	Family with sequence similarity 13 member B.	0.565
ENSPCAP00000001768	ENSPCAP00000006587	ENSPCAP00000001768	ENSPCAP00000006587	annotation not available	annotation not available	0.505
ENSPCAP00000001768	FAM13B	ENSPCAP00000001768	ENSPCAP00000004263	annotation not available	Family with sequence similarity 13 member B.	0.560
ENSPCAP00000006587	DNAJC18	ENSPCAP00000006587	ENSPCAP00000006618	annotation not available	DnaJ heat shock protein family (Hsp40) member C18.	0.573
ENSPCAP00000006587	ENSPCAP00000001768	ENSPCAP00000006587	ENSPCAP00000001768	annotation not available	annotation not available	0.505
ENSPCAP00000006587	FAM13B	ENSPCAP00000006587	ENSPCAP00000004263	annotation not available	Family with sequence similarity 13 member B.	0.589
ENSPCAP00000006587	GFRA3	ENSPCAP00000006587	ENSPCAP00000001981	annotation not available	GDNF family receptor alpha 3.	0.541
ENSPCAP00000010648	CYFIP2	ENSPCAP00000010648	ENSPCAP00000012412	annotation not available	Cytoplasmic FMR1 interacting protein 2.	0.774
ENSPCAP00000010648	FAM13B	ENSPCAP00000010648	ENSPCAP00000004263	annotation not available	Family with sequence similarity 13 member B.	0.628
ENSPCAP00000010648	SH3PXD2A	ENSPCAP00000010648	ENSPCAP00000007755	annotation not available	SH3 and PX domains 2A.	0.639
FAM13B	ASAP1	ENSPCAP00000004263	ENSPCAP00000010962	Family with sequence similarity 13 member B.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	0.565
FAM13B	CYFIP2	ENSPCAP00000004263	ENSPCAP00000012412	Family with sequence similarity 13 member B.	Cytoplasmic FMR1 interacting protein 2.	0.580
FAM13B	DNAJC18	ENSPCAP00000004263	ENSPCAP00000006618	Family with sequence similarity 13 member B.	DnaJ heat shock protein family (Hsp40) member C18.	0.565
FAM13B	ENSPCAP00000001768	ENSPCAP00000004263	ENSPCAP00000001768	Family with sequence similarity 13 member B.	annotation not available	0.560
FAM13B	ENSPCAP00000006587	ENSPCAP00000004263	ENSPCAP00000006587	Family with sequence similarity 13 member B.	annotation not available	0.589