TRAPPC1 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

TRAPPC1

Trafficking protein particle complex 1. (145 aa)

Predicted Functional Partners:

TRAPPC2L

0.999

ENSPCAP00000002607

0.998

ENSPCAP00000004328

0.998

TRAPPC6B

0.998

TRAPPC13

0.998

TRAPPC8

0.998

TRAPPC5

0.998

TRAPPC12

0.998

ENSPCAP00000014393

0.997

MAP11

0.996

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000002607	ENSPCAP00000004328	ENSPCAP00000002607	ENSPCAP00000004328	annotation not available	annotation not available	0.970
ENSPCAP00000002607	ENSPCAP00000014393	ENSPCAP00000002607	ENSPCAP00000014393	annotation not available	annotation not available	0.997
ENSPCAP00000002607	MAP11	ENSPCAP00000002607	ENSPCAP00000007543	annotation not available	Microtubule associated protein 11.	0.932
ENSPCAP00000002607	TRAPPC1	ENSPCAP00000002607	ENSPCAP00000004348	annotation not available	Trafficking protein particle complex 1.	0.998
ENSPCAP00000002607	TRAPPC12	ENSPCAP00000002607	ENSPCAP00000012725	annotation not available	Trafficking protein particle complex 12.	0.999
ENSPCAP00000002607	TRAPPC13	ENSPCAP00000002607	ENSPCAP00000005273	annotation not available	Trafficking protein particle complex 13.	0.992
ENSPCAP00000002607	TRAPPC2L	ENSPCAP00000002607	ENSPCAP00000002580	annotation not available	Trafficking protein particle complex 2 like.	0.998
ENSPCAP00000002607	TRAPPC5	ENSPCAP00000002607	ENSPCAP00000008611	annotation not available	Trafficking protein particle complex 5.	0.998
ENSPCAP00000002607	TRAPPC6B	ENSPCAP00000002607	ENSPCAP00000005128	annotation not available	Trafficking protein particle complex 6B.	0.998
ENSPCAP00000002607	TRAPPC8	ENSPCAP00000002607	ENSPCAP00000005423	annotation not available	Trafficking protein particle complex 8.	0.998
ENSPCAP00000004328	ENSPCAP00000002607	ENSPCAP00000004328	ENSPCAP00000002607	annotation not available	annotation not available	0.970
ENSPCAP00000004328	ENSPCAP00000014393	ENSPCAP00000004328	ENSPCAP00000014393	annotation not available	annotation not available	0.997
ENSPCAP00000004328	MAP11	ENSPCAP00000004328	ENSPCAP00000007543	annotation not available	Microtubule associated protein 11.	0.933
ENSPCAP00000004328	TRAPPC1	ENSPCAP00000004328	ENSPCAP00000004348	annotation not available	Trafficking protein particle complex 1.	0.998
ENSPCAP00000004328	TRAPPC12	ENSPCAP00000004328	ENSPCAP00000012725	annotation not available	Trafficking protein particle complex 12.	0.973
ENSPCAP00000004328	TRAPPC13	ENSPCAP00000004328	ENSPCAP00000005273	annotation not available	Trafficking protein particle complex 13.	0.975
ENSPCAP00000004328	TRAPPC2L	ENSPCAP00000004328	ENSPCAP00000002580	annotation not available	Trafficking protein particle complex 2 like.	0.998
ENSPCAP00000004328	TRAPPC5	ENSPCAP00000004328	ENSPCAP00000008611	annotation not available	Trafficking protein particle complex 5.	0.998
ENSPCAP00000004328	TRAPPC6B	ENSPCAP00000004328	ENSPCAP00000005128	annotation not available	Trafficking protein particle complex 6B.	0.996
ENSPCAP00000004328	TRAPPC8	ENSPCAP00000004328	ENSPCAP00000005423	annotation not available	Trafficking protein particle complex 8.	0.997