ENSPCAP00000004368 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000004368

annotation not available (192 aa)

Predicted Functional Partners:

ENSPCAP00000007000

0.927

ENSPCAP00000008959

0.911

IRF3

0.850

NFKB1

0.832

ENSPCAP00000004419

0.824

IL10RB

0.820

ENSPCAP00000012948

0.784

IL12RB1

0.777

IFNLR1

0.776

IFNG

0.759

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000004368	ENSPCAP00000004419	ENSPCAP00000004368	ENSPCAP00000004419	annotation not available	annotation not available	0.824
ENSPCAP00000004368	ENSPCAP00000007000	ENSPCAP00000004368	ENSPCAP00000007000	annotation not available	annotation not available	0.927
ENSPCAP00000004368	ENSPCAP00000008959	ENSPCAP00000004368	ENSPCAP00000008959	annotation not available	annotation not available	0.911
ENSPCAP00000004368	ENSPCAP00000012948	ENSPCAP00000004368	ENSPCAP00000012948	annotation not available	annotation not available	0.784
ENSPCAP00000004368	IFNG	ENSPCAP00000004368	ENSPCAP00000010797	annotation not available	Interferon gamma.	0.759
ENSPCAP00000004368	IFNLR1	ENSPCAP00000004368	ENSPCAP00000007479	annotation not available	Interferon lambda receptor 1.	0.776
ENSPCAP00000004368	IL10RB	ENSPCAP00000004368	ENSPCAP00000007027	annotation not available	Interleukin 10 receptor subunit beta.	0.820
ENSPCAP00000004368	IL12RB1	ENSPCAP00000004368	ENSPCAP00000009614	annotation not available	Interleukin 12 receptor subunit beta 1.	0.777
ENSPCAP00000004368	IRF3	ENSPCAP00000004368	ENSPCAP00000008035	annotation not available	Interferon regulatory factor 3.	0.850
ENSPCAP00000004368	NFKB1	ENSPCAP00000004368	ENSPCAP00000007711	annotation not available	Nuclear factor kappa B subunit 1.	0.832
ENSPCAP00000004419	ENSPCAP00000004368	ENSPCAP00000004419	ENSPCAP00000004368	annotation not available	annotation not available	0.824
ENSPCAP00000004419	IL10RB	ENSPCAP00000004419	ENSPCAP00000007027	annotation not available	Interleukin 10 receptor subunit beta.	0.437
ENSPCAP00000004419	IL12RB1	ENSPCAP00000004419	ENSPCAP00000009614	annotation not available	Interleukin 12 receptor subunit beta 1.	0.432
ENSPCAP00000004419	IRF3	ENSPCAP00000004419	ENSPCAP00000008035	annotation not available	Interferon regulatory factor 3.	0.470
ENSPCAP00000004419	NFKB1	ENSPCAP00000004419	ENSPCAP00000007711	annotation not available	Nuclear factor kappa B subunit 1.	0.999
ENSPCAP00000007000	ENSPCAP00000004368	ENSPCAP00000007000	ENSPCAP00000004368	annotation not available	annotation not available	0.927
ENSPCAP00000007000	ENSPCAP00000008959	ENSPCAP00000007000	ENSPCAP00000008959	annotation not available	annotation not available	0.995
ENSPCAP00000007000	ENSPCAP00000012948	ENSPCAP00000007000	ENSPCAP00000012948	annotation not available	annotation not available	0.956
ENSPCAP00000007000	IFNG	ENSPCAP00000007000	ENSPCAP00000010797	annotation not available	Interferon gamma.	0.956
ENSPCAP00000007000	IFNLR1	ENSPCAP00000007000	ENSPCAP00000007479	annotation not available	Interferon lambda receptor 1.	0.420