STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPM1FProtein phosphatase, Mg2+/Mn2+ dependent 1F. (374 aa)    
Predicted Functional Partners:
OPTN
Optineurin.
    
 0.711
TNF
Tumor necrosis factor.
    
 0.707
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
   0.692
TAB3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.674
TAB2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.674
ENSPCAP00000010878
annotation not available
   
 0.672
TRAF7
TNF receptor associated factor 7.
   
 0.660
RIPK4
Receptor interacting serine/threonine kinase 4.
   
 0.658
ENSPCAP00000005461
annotation not available
  
 0.656
PDHB
Pyruvate dehydrogenase E1 beta subunit.
   
 0.643
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.