Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP29Ubiquitin specific peptidase 29. (913 aa)    
Predicted Functional Partners:
FBXW11
F-box and WD repeat domain containing 11.
    
 
 0.790
RUVBL1
RuvB like AAA ATPase 1.
    
  0.771
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 
 0.758
STAM
Signal transducing adaptor molecule.
    
 0.742
STAM2
Signal transducing adaptor molecule 2.
    
 0.742
AR
Androgen receptor.
    
 0.740
PSMC5
Proteasome 26S subunit, ATPase 5.
    
 0.727
FZR1
Fizzy and cell division cycle 20 related 1.
    
  0.711
USP28
Ubiquitin specific peptidase 28.
    
 0.699
SNAI1
Snail family transcriptional repressor 1.
    
 
 0.685
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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