Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (606 aa)    
Predicted Functional Partners:
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
   
 0.973
LDB1
LIM domain binding 1.
    
 
 0.958
ENSPCAP00000001088
annotation not available
   
 0.897
UBE2D3
Ubiquitin conjugating enzyme E2 D3.
   
 0.897
LHX3
LIM homeobox 3.
    
 
 0.857
UBC
Ubiquitin C.
    
  0.843
SMAD7
SMAD family member 7.
    
 0.829
LDB2
LIM domain binding 2.
    
 
 0.824
UBXN1
UBX domain protein 1.
   
 
 0.810
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.761
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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