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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX6DEAD-box helicase 6. (483 aa)    
Predicted Functional Partners:
EDC3
Enhancer of mRNA decapping 3.
   
 0.999
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.997
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.996
ENSPCAP00000010294
annotation not available
    
 0.996
ENSPCAP00000015164
annotation not available
   
 0.994
EDC4
Enhancer of mRNA decapping 4.
    
 0.987
DCP2
Decapping mRNA 2.
   
 0.983
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.979
LSM14A
LSM14A mRNA processing body assembly factor.
   
 
 0.977
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.974
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.