NAV2 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NAV2

Neuron navigator 2. (2393 aa)

Predicted Functional Partners:

VPS9D1

0.728

ENSPCAP00000013345

0.728

MAP2K4

0.638

TLN1

0.598

TLN2

0.598

ENSPCAP00000005006

0.575

MRPL11

0.572

ENSPCAP00000014570

0.564

TRIP6

0.541

ENSPCAP00000006538

0.541

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000005006	NAV2	ENSPCAP00000005006	ENSPCAP00000004532	annotation not available	Neuron navigator 2.	0.575
ENSPCAP00000006538	NAV2	ENSPCAP00000006538	ENSPCAP00000004532	annotation not available	Neuron navigator 2.	0.541
ENSPCAP00000013345	NAV2	ENSPCAP00000013345	ENSPCAP00000004532	annotation not available	Neuron navigator 2.	0.728
ENSPCAP00000013345	VPS9D1	ENSPCAP00000013345	ENSPCAP00000001462	annotation not available	VPS9 domain containing 1.	0.869
ENSPCAP00000014570	NAV2	ENSPCAP00000014570	ENSPCAP00000004532	annotation not available	Neuron navigator 2.	0.564
MAP2K4	NAV2	ENSPCAP00000004074	ENSPCAP00000004532	Mitogen-activated protein kinase kinase 4.	Neuron navigator 2.	0.638
MRPL11	NAV2	ENSPCAP00000007796	ENSPCAP00000004532	Mitochondrial ribosomal protein L11.	Neuron navigator 2.	0.572
NAV2	ENSPCAP00000005006	ENSPCAP00000004532	ENSPCAP00000005006	Neuron navigator 2.	annotation not available	0.575
NAV2	ENSPCAP00000006538	ENSPCAP00000004532	ENSPCAP00000006538	Neuron navigator 2.	annotation not available	0.541
NAV2	ENSPCAP00000013345	ENSPCAP00000004532	ENSPCAP00000013345	Neuron navigator 2.	annotation not available	0.728
NAV2	ENSPCAP00000014570	ENSPCAP00000004532	ENSPCAP00000014570	Neuron navigator 2.	annotation not available	0.564
NAV2	MAP2K4	ENSPCAP00000004532	ENSPCAP00000004074	Neuron navigator 2.	Mitogen-activated protein kinase kinase 4.	0.638
NAV2	MRPL11	ENSPCAP00000004532	ENSPCAP00000007796	Neuron navigator 2.	Mitochondrial ribosomal protein L11.	0.572
NAV2	TLN1	ENSPCAP00000004532	ENSPCAP00000012918	Neuron navigator 2.	Talin 1.	0.598
NAV2	TLN2	ENSPCAP00000004532	ENSPCAP00000015061	Neuron navigator 2.	Talin 2.	0.598
NAV2	TRIP6	ENSPCAP00000004532	ENSPCAP00000001474	Neuron navigator 2.	Thyroid hormone receptor interactor 6.	0.541
NAV2	VPS9D1	ENSPCAP00000004532	ENSPCAP00000001462	Neuron navigator 2.	VPS9 domain containing 1.	0.728
TLN1	NAV2	ENSPCAP00000012918	ENSPCAP00000004532	Talin 1.	Neuron navigator 2.	0.598
TLN1	TLN2	ENSPCAP00000012918	ENSPCAP00000015061	Talin 1.	Talin 2.	0.841
TLN1	TRIP6	ENSPCAP00000012918	ENSPCAP00000001474	Talin 1.	Thyroid hormone receptor interactor 6.	0.473