Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KINKin17 DNA and RNA binding protein. (393 aa)    
Predicted Functional Partners:
METTL22
Methyltransferase like 22.
    
 0.997
RECQL5
RecQ like helicase 5.
    
   0.902
SF3B3
Splicing factor 3b subunit 3.
    
   0.892
SF3B1
Splicing factor 3b subunit 1.
    
   0.892
SF3A3
Splicing factor 3a subunit 3.
    
 
 0.871
ENSPCAP00000001332
annotation not available
    
 0.796
CDC40
Cell division cycle 40.
   
   0.769
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
   0.743
XAB2
XPA binding protein 2.
   
   0.742
BUD13
BUD13 homolog.
   
   0.742
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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