ENSPCAP00000004698 protein (Procavia capensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPCAP00000004698

annotation not available (1158 aa)

Predicted Functional Partners:

ENSPCAP00000003650

0.891

RHOA

0.891

ENSPCAP00000010499

0.891

PATJ

0.885

EPB41L4B

0.883

ENSPCAP00000004353

0.878

MPDZ

0.871

ENSPCAP00000007856

0.863

AKAP13

0.833

ARHGEF12

0.743

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP13	ARHGEF12	ENSPCAP00000009921	ENSPCAP00000002981	A-kinase anchoring protein 13.	Rho guanine nucleotide exchange factor 12.	0.889
AKAP13	ENSPCAP00000003650	ENSPCAP00000009921	ENSPCAP00000003650	A-kinase anchoring protein 13.	annotation not available	0.955
AKAP13	ENSPCAP00000004353	ENSPCAP00000009921	ENSPCAP00000004353	A-kinase anchoring protein 13.	annotation not available	0.806
AKAP13	ENSPCAP00000004698	ENSPCAP00000009921	ENSPCAP00000004698	A-kinase anchoring protein 13.	annotation not available	0.833
AKAP13	ENSPCAP00000007856	ENSPCAP00000009921	ENSPCAP00000007856	A-kinase anchoring protein 13.	annotation not available	0.781
AKAP13	ENSPCAP00000010499	ENSPCAP00000009921	ENSPCAP00000010499	A-kinase anchoring protein 13.	annotation not available	0.956
AKAP13	EPB41L4B	ENSPCAP00000009921	ENSPCAP00000006214	A-kinase anchoring protein 13.	Erythrocyte membrane protein band 4.1 like 4B.	0.618
AKAP13	MPDZ	ENSPCAP00000009921	ENSPCAP00000000099	A-kinase anchoring protein 13.	Multiple PDZ domain crumbs cell polarity complex component.	0.701
AKAP13	PATJ	ENSPCAP00000009921	ENSPCAP00000002593	A-kinase anchoring protein 13.	PATJ crumbs cell polarity complex component.	0.701
AKAP13	RHOA	ENSPCAP00000009921	ENSPCAP00000009007	A-kinase anchoring protein 13.	Ras homolog family member A.	0.956
ARHGEF12	AKAP13	ENSPCAP00000002981	ENSPCAP00000009921	Rho guanine nucleotide exchange factor 12.	A-kinase anchoring protein 13.	0.889
ARHGEF12	ENSPCAP00000003650	ENSPCAP00000002981	ENSPCAP00000003650	Rho guanine nucleotide exchange factor 12.	annotation not available	0.966
ARHGEF12	ENSPCAP00000004698	ENSPCAP00000002981	ENSPCAP00000004698	Rho guanine nucleotide exchange factor 12.	annotation not available	0.743
ARHGEF12	ENSPCAP00000010499	ENSPCAP00000002981	ENSPCAP00000010499	Rho guanine nucleotide exchange factor 12.	annotation not available	0.966
ARHGEF12	RHOA	ENSPCAP00000002981	ENSPCAP00000009007	Rho guanine nucleotide exchange factor 12.	Ras homolog family member A.	0.966
ENSPCAP00000003650	AKAP13	ENSPCAP00000003650	ENSPCAP00000009921	annotation not available	A-kinase anchoring protein 13.	0.955
ENSPCAP00000003650	ARHGEF12	ENSPCAP00000003650	ENSPCAP00000002981	annotation not available	Rho guanine nucleotide exchange factor 12.	0.966
ENSPCAP00000003650	ENSPCAP00000004353	ENSPCAP00000003650	ENSPCAP00000004353	annotation not available	annotation not available	0.638
ENSPCAP00000003650	ENSPCAP00000004698	ENSPCAP00000003650	ENSPCAP00000004698	annotation not available	annotation not available	0.891
ENSPCAP00000004353	AKAP13	ENSPCAP00000004353	ENSPCAP00000009921	annotation not available	A-kinase anchoring protein 13.	0.806