PDE6G protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

PDE6G

Phosphodiesterase 6G. (115 aa)

Predicted Functional Partners:

GNAT1

0.992

ENSPCAP00000011545

0.990

ENSPCAP00000011576

0.990

PDE6C

0.978

GNAT2

0.953

ENSPCAP00000014970

0.952

GNAT3

0.942

RHO

0.916

ROM1

0.914

PDE6H

0.904

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000011545	ENSPCAP00000011576	ENSPCAP00000011545	ENSPCAP00000011576	annotation not available	annotation not available	0.841
ENSPCAP00000011545	ENSPCAP00000014970	ENSPCAP00000011545	ENSPCAP00000014970	annotation not available	annotation not available	0.935
ENSPCAP00000011545	GNAT1	ENSPCAP00000011545	ENSPCAP00000005369	annotation not available	G protein subunit alpha transducin 1.	0.917
ENSPCAP00000011545	GNAT2	ENSPCAP00000011545	ENSPCAP00000013811	annotation not available	G protein subunit alpha transducin 2.	0.896
ENSPCAP00000011545	GNAT3	ENSPCAP00000011545	ENSPCAP00000004541	annotation not available	G protein subunit alpha transducin 3.	0.752
ENSPCAP00000011545	PDE6G	ENSPCAP00000011545	ENSPCAP00000004714	annotation not available	Phosphodiesterase 6G.	0.990
ENSPCAP00000011545	PDE6H	ENSPCAP00000011545	ENSPCAP00000001204	annotation not available	Phosphodiesterase 6H.	0.907
ENSPCAP00000011545	RHO	ENSPCAP00000011545	ENSPCAP00000012267	annotation not available	Rhodopsin.	0.557
ENSPCAP00000011545	ROM1	ENSPCAP00000011545	ENSPCAP00000014425	annotation not available	Retinal outer segment membrane protein 1.	0.423
ENSPCAP00000011576	ENSPCAP00000011545	ENSPCAP00000011576	ENSPCAP00000011545	annotation not available	annotation not available	0.841
ENSPCAP00000011576	ENSPCAP00000014970	ENSPCAP00000011576	ENSPCAP00000014970	annotation not available	annotation not available	0.935
ENSPCAP00000011576	GNAT1	ENSPCAP00000011576	ENSPCAP00000005369	annotation not available	G protein subunit alpha transducin 1.	0.917
ENSPCAP00000011576	GNAT2	ENSPCAP00000011576	ENSPCAP00000013811	annotation not available	G protein subunit alpha transducin 2.	0.896
ENSPCAP00000011576	GNAT3	ENSPCAP00000011576	ENSPCAP00000004541	annotation not available	G protein subunit alpha transducin 3.	0.752
ENSPCAP00000011576	PDE6G	ENSPCAP00000011576	ENSPCAP00000004714	annotation not available	Phosphodiesterase 6G.	0.990
ENSPCAP00000011576	PDE6H	ENSPCAP00000011576	ENSPCAP00000001204	annotation not available	Phosphodiesterase 6H.	0.907
ENSPCAP00000011576	RHO	ENSPCAP00000011576	ENSPCAP00000012267	annotation not available	Rhodopsin.	0.557
ENSPCAP00000011576	ROM1	ENSPCAP00000011576	ENSPCAP00000014425	annotation not available	Retinal outer segment membrane protein 1.	0.423
ENSPCAP00000014970	ENSPCAP00000011545	ENSPCAP00000014970	ENSPCAP00000011545	annotation not available	annotation not available	0.935
ENSPCAP00000014970	ENSPCAP00000011576	ENSPCAP00000014970	ENSPCAP00000011576	annotation not available	annotation not available	0.935