ENSPCAP00000004819 protein (Procavia capensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

ENSPCAP00000004819

annotation not available (737 aa)

Predicted Functional Partners:

RBM46

0.784

ENSPCAP00000012271

0.784

DBF4B

0.663

ENSPCAP00000002978

0.662

ENSPCAP00000010772

0.662

ENSPCAP00000011356

0.646

PARPBP

0.632

ZBTB26

0.614

AMIGO3

0.610

AMIGO1

0.610

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMIGO1	ENSPCAP00000004819	ENSPCAP00000014436	ENSPCAP00000004819	Adhesion molecule with Ig like domain 1.	annotation not available	0.610
AMIGO3	ENSPCAP00000004819	ENSPCAP00000010747	ENSPCAP00000004819	Adhesion molecule with Ig like domain 3.	annotation not available	0.610
DBF4B	ENSPCAP00000004819	ENSPCAP00000012385	ENSPCAP00000004819	DBF4 zinc finger B.	annotation not available	0.663
ENSPCAP00000002978	ENSPCAP00000004819	ENSPCAP00000002978	ENSPCAP00000004819	annotation not available	annotation not available	0.662
ENSPCAP00000002978	ENSPCAP00000010772	ENSPCAP00000002978	ENSPCAP00000010772	annotation not available	annotation not available	0.969
ENSPCAP00000002978	ENSPCAP00000011356	ENSPCAP00000002978	ENSPCAP00000011356	annotation not available	annotation not available	0.909
ENSPCAP00000002978	PARPBP	ENSPCAP00000002978	ENSPCAP00000008927	annotation not available	PARP1 binding protein.	0.519
ENSPCAP00000004819	AMIGO1	ENSPCAP00000004819	ENSPCAP00000014436	annotation not available	Adhesion molecule with Ig like domain 1.	0.610
ENSPCAP00000004819	AMIGO3	ENSPCAP00000004819	ENSPCAP00000010747	annotation not available	Adhesion molecule with Ig like domain 3.	0.610
ENSPCAP00000004819	DBF4B	ENSPCAP00000004819	ENSPCAP00000012385	annotation not available	DBF4 zinc finger B.	0.663
ENSPCAP00000004819	ENSPCAP00000002978	ENSPCAP00000004819	ENSPCAP00000002978	annotation not available	annotation not available	0.662
ENSPCAP00000004819	ENSPCAP00000010772	ENSPCAP00000004819	ENSPCAP00000010772	annotation not available	annotation not available	0.662
ENSPCAP00000004819	ENSPCAP00000011356	ENSPCAP00000004819	ENSPCAP00000011356	annotation not available	annotation not available	0.646
ENSPCAP00000004819	ENSPCAP00000012271	ENSPCAP00000004819	ENSPCAP00000012271	annotation not available	annotation not available	0.784
ENSPCAP00000004819	PARPBP	ENSPCAP00000004819	ENSPCAP00000008927	annotation not available	PARP1 binding protein.	0.632
ENSPCAP00000004819	RBM46	ENSPCAP00000004819	ENSPCAP00000002943	annotation not available	RNA binding motif protein 46.	0.784
ENSPCAP00000004819	ZBTB26	ENSPCAP00000004819	ENSPCAP00000009569	annotation not available	Zinc finger and BTB domain containing 26.	0.614
ENSPCAP00000010772	ENSPCAP00000002978	ENSPCAP00000010772	ENSPCAP00000002978	annotation not available	annotation not available	0.969
ENSPCAP00000010772	ENSPCAP00000004819	ENSPCAP00000010772	ENSPCAP00000004819	annotation not available	annotation not available	0.662
ENSPCAP00000010772	ENSPCAP00000011356	ENSPCAP00000010772	ENSPCAP00000011356	annotation not available	annotation not available	0.909