STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM6Transglutaminase 6. (703 aa)    
Predicted Functional Partners:
F13B
Coagulation factor XIII B chain.
    
 0.675
FGA
Fibrinogen alpha chain.
    
 0.559
F2
Coagulation factor II, thrombin.
     
 0.538
FGG
Fibrinogen gamma chain.
    
 0.503
SERPINE2
Serpin family E member 2.
     
 0.488
FGB
Fibrinogen beta chain.
    
 0.483
IKBKB
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
  0.462
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
  0.462
UBE2I
Ubiquitin conjugating enzyme E2 I.
    
  0.455
KCTD2
Potassium channel tetramerization domain containing 2.
    
  0.455
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.