GEMIN2 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GEMIN2

Gem nuclear organelle associated protein 2. (280 aa)

Predicted Functional Partners:

ENSPCAP00000003902

0.997

ENSPCAP00000006892

0.997

SNRPD2

0.995

GEMIN4

0.994

GEMIN5

0.994

ENSPCAP00000012299

0.993

GEMIN7

0.992

SNRPD3

0.990

ENSPCAP00000010409

0.982

STRAP

0.974

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCAP00000003902	ENSPCAP00000006892	ENSPCAP00000003902	ENSPCAP00000006892	annotation not available	annotation not available	0.997
ENSPCAP00000003902	ENSPCAP00000010409	ENSPCAP00000003902	ENSPCAP00000010409	annotation not available	annotation not available	0.996
ENSPCAP00000003902	ENSPCAP00000012299	ENSPCAP00000003902	ENSPCAP00000012299	annotation not available	annotation not available	0.996
ENSPCAP00000003902	GEMIN2	ENSPCAP00000003902	ENSPCAP00000005029	annotation not available	Gem nuclear organelle associated protein 2.	0.997
ENSPCAP00000003902	GEMIN4	ENSPCAP00000003902	ENSPCAP00000007365	annotation not available	Gem nuclear organelle associated protein 4.	0.996
ENSPCAP00000003902	GEMIN5	ENSPCAP00000003902	ENSPCAP00000008089	annotation not available	Gem nuclear organelle associated protein 5.	0.997
ENSPCAP00000003902	GEMIN7	ENSPCAP00000003902	ENSPCAP00000010271	annotation not available	Gem nuclear organelle associated protein 7.	0.996
ENSPCAP00000003902	SNRPD2	ENSPCAP00000003902	ENSPCAP00000015715	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.997
ENSPCAP00000003902	SNRPD3	ENSPCAP00000003902	ENSPCAP00000001909	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.995
ENSPCAP00000003902	STRAP	ENSPCAP00000003902	ENSPCAP00000011150	annotation not available	Serine/threonine kinase receptor associated protein.	0.997
ENSPCAP00000006892	ENSPCAP00000003902	ENSPCAP00000006892	ENSPCAP00000003902	annotation not available	annotation not available	0.997
ENSPCAP00000006892	ENSPCAP00000010409	ENSPCAP00000006892	ENSPCAP00000010409	annotation not available	annotation not available	0.996
ENSPCAP00000006892	ENSPCAP00000012299	ENSPCAP00000006892	ENSPCAP00000012299	annotation not available	annotation not available	0.998
ENSPCAP00000006892	GEMIN2	ENSPCAP00000006892	ENSPCAP00000005029	annotation not available	Gem nuclear organelle associated protein 2.	0.997
ENSPCAP00000006892	GEMIN4	ENSPCAP00000006892	ENSPCAP00000007365	annotation not available	Gem nuclear organelle associated protein 4.	0.999
ENSPCAP00000006892	GEMIN5	ENSPCAP00000006892	ENSPCAP00000008089	annotation not available	Gem nuclear organelle associated protein 5.	0.999
ENSPCAP00000006892	GEMIN7	ENSPCAP00000006892	ENSPCAP00000010271	annotation not available	Gem nuclear organelle associated protein 7.	0.998
ENSPCAP00000006892	SNRPD2	ENSPCAP00000006892	ENSPCAP00000015715	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.994
ENSPCAP00000006892	SNRPD3	ENSPCAP00000006892	ENSPCAP00000001909	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.967
ENSPCAP00000006892	STRAP	ENSPCAP00000006892	ENSPCAP00000011150	annotation not available	Serine/threonine kinase receptor associated protein.	0.998