Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSD4Pleckstrin and Sec7 domain containing 4. (1012 aa)    
Predicted Functional Partners:
ARL14
ADP ribosylation factor like GTPase 14.
    
 
 0.961
ARF6
ADP ribosylation factor 6.
    
 
 0.848
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
    
   0.748
GBF1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
     
 0.700
GIT2
GIT ArfGAP 2.
    
 
 0.699
IQSEC2
IQ motif and Sec7 domain ArfGEF 2.
     
 0.692
ARFGEF1
ADP ribosylation factor guanine nucleotide exchange factor 1.
     
  0.679
AGBL2
ATP/GTP binding protein like 2.
      
 0.589
PRC1
Protein regulator of cytokinesis 1.
      
 0.585
CHAMP1
Chromosome alignment maintaining phosphoprotein 1.
      
 0.584
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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