Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTF1RTF1 homolog, Paf1/RNA polymerase II complex component. (641 aa)    
Predicted Functional Partners:
ENSPCAP00000004346
annotation not available
   
 0.999
ENSPCAP00000007162
annotation not available
   
 0.999
CDC73
Cell division cycle 73.
   
 0.999
WDR61
WD repeat domain 61.
    
 0.998
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.982
SSRP1
Structure specific recognition protein 1.
   
 0.980
CHD1
Chromodomain helicase DNA binding protein 1.
   
 
 0.974
ENSPCAP00000013393
annotation not available
   
 0.953
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.950
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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