close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTF1RTF1 homolog, Paf1/RNA polymerase II complex component. (641 aa)    
Predicted Functional Partners:
ENSPCAP00000007162
annotation not available
   
 0.999
ENSPCAP00000004346
annotation not available
   
 0.996
CDC73
Cell division cycle 73.
   
 0.995
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.995
SSRP1
Structure specific recognition protein 1.
   
 0.990
ENSPCAP00000013393
annotation not available
   
 0.978
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.971
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.968
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 
 0.967
WDR61
WD repeat domain 61.
    
 0.964
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.