GRID2 protein (Procavia capensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRID2

Glutamate ionotropic receptor delta type subunit 2. (1007 aa)

Predicted Functional Partners:

GRIN2B

0.694

GRIN2A

0.685

GRIA2

0.645

GRIA4

0.636

GRIN1

0.605

GRIN2D

0.578

GRIN2C

0.578

DLG2

0.572

DLG1

0.572

DLG4

0.532

Your Current Organism:

Procavia capensis

NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG1	DLG2	ENSPCAP00000011939	ENSPCAP00000006477	Discs large MAGUK scaffold protein 1.	Discs large MAGUK scaffold protein 2.	0.893
DLG1	DLG4	ENSPCAP00000011939	ENSPCAP00000014256	Discs large MAGUK scaffold protein 1.	Discs large MAGUK scaffold protein 4.	0.864
DLG1	GRIA2	ENSPCAP00000011939	ENSPCAP00000008332	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor AMPA type subunit 2.	0.639
DLG1	GRIA4	ENSPCAP00000011939	ENSPCAP00000002799	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor AMPA type subunit 4.	0.722
DLG1	GRID2	ENSPCAP00000011939	ENSPCAP00000009449	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor delta type subunit 2.	0.572
DLG1	GRIN1	ENSPCAP00000011939	ENSPCAP00000004043	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor NMDA type subunit 1.	0.881
DLG1	GRIN2A	ENSPCAP00000011939	ENSPCAP00000003177	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor NMDA type subunit 2A.	0.895
DLG1	GRIN2B	ENSPCAP00000011939	ENSPCAP00000012995	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor NMDA type subunit 2B.	0.896
DLG1	GRIN2C	ENSPCAP00000011939	ENSPCAP00000010104	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor NMDA type subunit 2C.	0.731
DLG1	GRIN2D	ENSPCAP00000011939	ENSPCAP00000003065	Discs large MAGUK scaffold protein 1.	Glutamate ionotropic receptor NMDA type subunit 2D.	0.720
DLG2	DLG1	ENSPCAP00000006477	ENSPCAP00000011939	Discs large MAGUK scaffold protein 2.	Discs large MAGUK scaffold protein 1.	0.893
DLG2	DLG4	ENSPCAP00000006477	ENSPCAP00000014256	Discs large MAGUK scaffold protein 2.	Discs large MAGUK scaffold protein 4.	0.866
DLG2	GRIA2	ENSPCAP00000006477	ENSPCAP00000008332	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor AMPA type subunit 2.	0.639
DLG2	GRIA4	ENSPCAP00000006477	ENSPCAP00000002799	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor AMPA type subunit 4.	0.722
DLG2	GRID2	ENSPCAP00000006477	ENSPCAP00000009449	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor delta type subunit 2.	0.572
DLG2	GRIN1	ENSPCAP00000006477	ENSPCAP00000004043	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor NMDA type subunit 1.	0.881
DLG2	GRIN2A	ENSPCAP00000006477	ENSPCAP00000003177	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor NMDA type subunit 2A.	0.895
DLG2	GRIN2B	ENSPCAP00000006477	ENSPCAP00000012995	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor NMDA type subunit 2B.	0.896
DLG2	GRIN2C	ENSPCAP00000006477	ENSPCAP00000010104	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor NMDA type subunit 2C.	0.731
DLG2	GRIN2D	ENSPCAP00000006477	ENSPCAP00000003065	Discs large MAGUK scaffold protein 2.	Glutamate ionotropic receptor NMDA type subunit 2D.	0.720