STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM50AFamily with sequence similarity 50 member A. (360 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
  0.910
ALYREF
Aly/REF export factor.
   
  0.877
C9orf78
Chromosome 9 open reading frame 78.
    
 0.870
CDC40
Cell division cycle 40.
   
 
  0.852
FAM32A
Family with sequence similarity 32 member A.
    
  0.848
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.842
PRKRIP1
PRKR interacting protein 1.
   
 
  0.831
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
  0.721
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
   
  0.721
POLDIP3
DNA polymerase delta interacting protein 3.
   
  0.710
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.