STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT44tRNA methyltransferase 44 homolog. (730 aa)    
Predicted Functional Partners:
TRMT6
tRNA methyltransferase 6.
   
  
 0.661
METTL1
Methyltransferase like 1.
   
  
 0.659
ENSPCAP00000008791
annotation not available
   
  
 0.622
TRMT61A
tRNA methyltransferase 61A.
   
  
 0.613
TRMT13
tRNA methyltransferase 13 homolog.
   
  
 0.595
ENSPCAP00000008467
annotation not available
   
  
 0.592
TRUB1
TruB pseudouridine synthase family member 1.
   
  
 0.568
TARBP1
TAR (HIV-1) RNA binding protein 1.
   
  
 0.564
WDR4
WD repeat domain 4.
   
  
 0.564
WDR6
WD repeat domain 6.
   
  
 0.557
Your Current Organism:
Procavia capensis
NCBI taxonomy Id: 9813
Other names: Cape hyrax, Cape rock hyrax, P. capensis, large-toothed rock hyrax, rock dassie, rock hyrax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.