Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OXB_0106Fumarylacetoacetase. (430 aa)    
Predicted Functional Partners:
OXB_0107
Hypothetical protein.
 
     0.959
OXB_0114
Homogentisate 12-dioxygenase.
 
  
 0.902
OXB_0840
2-keto-4-pentenoate hydratase.
     
  0.900
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
  0.834
OXB_3198
Succinate dehydrogenase flavoprotein subunit.
  
 
  0.824
OXB_3197
Succinate dehydrogenase iron-sulfur subunit.
  
 
  0.813
OXB_3199
Succinate dehydrogenase, cytochrome b subunit.
  
 
  0.808
OXB_0254
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.806
OXB_0108
Luciferase like protein.
       0.706
oxd
Aldoxime dehydrates; Catalyzes the stoichiometric dehydration of Z- phenylacetaldoxime to phenylacetonitrile. Prefers the Z-form of phenylacetaldoxime over its E-isomer.
  
     0.401
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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