Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_0197HTH-type transcriptional regulator. (68 aa)    
Predicted Functional Partners:
OXB_0196
Hypothetical protein.
       0.812
OXB_0194
ABC superfamily ATP binding cassette transporter.
       0.608
OXB_0195
ABC transporter.
       0.608
OXB_1476
Rele/stbe family addiction module toxin.
    
 0.541
OXB_1679
Hypothetical protein.
    
 0.541
OXB_0472
Endoribonuclease; Toxic component of a type II toxin-antitoxin (TA) system.
    
 0.539
OXB_1702
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
     
 0.536
OXB_1013
Regulator of stationary/sporulation gene.
     
  0.504
OXB_3470
Abrb family transcriptional regulator.
     
  0.504
OXB_1477
Spovt/abrb domain-containing protein.
     
  0.416
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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