Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_0786Hypothetical protein. (638 aa)    
Predicted Functional Partners:
OXB_0209
Hypothetical protein; Belongs to the Dps family.
  
     0.647
OXB_2441
Bacteriophage spp1 adsorption protein yueb.
  
     0.598
OXB_2402
Hypothetical protein.
  
     0.580
OXB_2416
DNA helicase.
  
     0.560
OXB_1122
Hypothetical protein.
 
     0.558
OXB_1372
Hypothetical protein.
  
     0.521
OXB_0539
Hypothetical protein.
  
     0.505
OXB_1283
Hemerythrin HHE cation binding domain protein.
  
     0.483
OXB_1826
Spore coat protein y.
  
     0.479
OXB_3376
Dual specificity protein phosphatase.
  
     0.474
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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