Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_0791ABC-type transport system. (311 aa)    
Predicted Functional Partners:
OXB_0792
ABC transporter ATP-binding protein.
 
 
 0.968
OXB_0793
ABC-type multidrug transport system, atpase component.
  
 
 0.943
OXB_0796
Hypothetical protein.
  
    0.833
OXB_0795
Hypothetical protein.
  
    0.818
OXB_0794
GntR family transcriptional regulator.
       0.786
OXB_0669
Multidrug ABC transporter ATPase.
  
 
 0.761
OXB_0789
Inner membrane protein.
 
     0.637
OXB_0790
ABC-type phosphate transport system, atpase component; Belongs to the ABC transporter superfamily.
 
   
 0.632
OXB_1367
Hypothetical protein.
  
    0.594
OXB_0670
GntR family transcriptional regulator.
  
  
 0.579
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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