OXB_1069 protein (Bacillus sp. OxB1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OXB_1069

Type I restriction-modification system specificity subunit. (392 aa)

Predicted Functional Partners:

OXB_1068

0.992

OXB_1070

0.973

OXB_0933

0.939

OXB_2296

0.843

OXB_0930

0.819

OXB_2298

0.671

OXB_1065

0.633

OXB_0931

0.588

OXB_1067

0.540

OXB_0932

0.526

Your Current Organism:

Bacillus sp. OxB1

NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
OXB_0930	OXB_0931	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Putative type I restriction enzyme.	0.970
OXB_0930	OXB_0932	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Toxin fic.	0.826
OXB_0930	OXB_0933	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system m.	0.974
OXB_0930	OXB_1065	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Predicted atp-dependent endonuclease of the old family.	0.676
OXB_0930	OXB_1068	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction modification system m.	0.857
OXB_0930	OXB_1069	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system specificity subunit.	0.819
OXB_0930	OXB_2296	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system DNA methylase.	0.946
OXB_0931	OXB_0930	Putative type I restriction enzyme.	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.970
OXB_0931	OXB_0932	Putative type I restriction enzyme.	Toxin fic.	0.830
OXB_0931	OXB_0933	Putative type I restriction enzyme.	Type I restriction-modification system m.	0.977
OXB_0931	OXB_1065	Putative type I restriction enzyme.	Predicted atp-dependent endonuclease of the old family.	0.633
OXB_0931	OXB_1068	Putative type I restriction enzyme.	Type I restriction modification system m.	0.883
OXB_0931	OXB_1069	Putative type I restriction enzyme.	Type I restriction-modification system specificity subunit.	0.588
OXB_0931	OXB_1070	Putative type I restriction enzyme.	Type I site-specific deoxyribonuclease.	0.638
OXB_0931	OXB_2296	Putative type I restriction enzyme.	Type I restriction-modification system DNA methylase.	0.849
OXB_0931	OXB_2298	Putative type I restriction enzyme.	Type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.712
OXB_0932	OXB_0930	Toxin fic.	Site-specific deoxyribonuclease hsdr; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.826
OXB_0932	OXB_0931	Toxin fic.	Putative type I restriction enzyme.	0.830
OXB_0932	OXB_0933	Toxin fic.	Type I restriction-modification system m.	0.894
OXB_0932	OXB_1068	Toxin fic.	Type I restriction modification system m.	0.545