Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_1306Carboxysome protein. (100 aa)    
Predicted Functional Partners:
OXB_1307
Microcompartment protein.
 
 
 0.980
OXB_1304
Microcompartment protein.
 
 
 0.964
OXB_1768
Microcompartments protein.
 
 
 0.909
OXB_1766
Microcompartment protein.
 
 
 0.908
OXB_1769
Microcompartment protein.
 
 
 0.908
OXB_1305
Propanediol utilization protein pdul.
 
   
 0.858
OXB_1297
Ethanolamine utilization protein.
 
   
 0.831
OXB_1302
Ethanolamine utilization protein eutl.
 
  
 0.822
OXB_1298
Ethanolamine utilization protein eutp; Belongs to the EutP/PduV family.
 
   
 0.813
OXB_1299
Ethanolamine utilization protein euta.
 
  
 0.754
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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