Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_1965Sporulation specific protein spoiiga. (284 aa)    
Predicted Functional Partners:
OXB_1039
Serine/threonine protein phosphatase 1.
  
  
 0.926
OXB_1966
Sporulation sigma factor sige; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.859
OXB_1968
Ylmc/ymxh family sporulation protein.
 
     0.822
OXB_2754
BRP/BLH family beta-carotene 15,15'-monooxygenase.
  
    0.785
OXB_1967
Sporulation sigma factor sigg; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.777
OXB_2326
Peptidase propeptide and ypeb domain protein.
  
   
 0.769
OXB_1357
CMP-n-acetylneuraminic acid synthetase.
  
     0.764
OXB_3091
Hypothetical protein.
  
     0.762
OXB_1036
Hypothetical protein.
  
  
 0.729
OXB_1939
Hypothetical protein.
  
   
 0.726
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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