STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OXB_1968Ylmc/ymxh family sporulation protein. (81 aa)    
Predicted Functional Partners:
OXB_1965
Sporulation specific protein spoiiga.
 
     0.822
OXB_1357
CMP-n-acetylneuraminic acid synthetase.
  
     0.665
OXB_1039
Serine/threonine protein phosphatase 1.
  
     0.654
OXB_0883
Hypothetical protein.
    
  0.647
OXB_2240
Hypothetical protein.
    
  0.647
OXB_3515
Hypothetical protein.
    
  0.647
OXB_1364
Hypothetical protein.
  
     0.619
OXB_1969
Cell division protein ylme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.619
sepF
Divisiome protein ylmf; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
       0.619
OXB_1939
Hypothetical protein.
  
     0.617
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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