STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OXB_2004Hypothetical ylou protein. (120 aa)    
Predicted Functional Partners:
OXB_2005
Glycerone kinase.
 
  
 0.981
OXB_2017
DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.607
OXB_1691
Protein degv.
 
    0.574
OXB_0957
Hypothetical protein.
  
     0.569
OXB_1350
Degv family protein.
 
    0.539
rpmB
50s ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.538
whiA
Sporulation regulator whia; Involved in cell division and chromosome segregation.
  
     0.536
OXB_2525
Degv family protein.
 
    0.519
OXB_3057
Hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.507
OXB_2006
L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.486
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.