STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OXB_2005Glycerone kinase. (553 aa)    
Predicted Functional Partners:
OXB_2004
Hypothetical ylou protein.
 
  
 0.996
OXB_2525
Degv family protein.
 
 0.993
OXB_1691
Protein degv.
 
 0.992
OXB_1350
Degv family protein.
 
 0.970
OXB_1789
Degv family protein.
 
 0.970
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.724
plsX
Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
 
  
 0.691
OXB_2749
Conserved protein yqhy.
 
  
 0.672
rpmB
50s ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.659
OXB_2006
L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.644
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.