Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OXB_2162Protein ycsi; Belongs to the D-glutamate cyclase family. (264 aa)    
Predicted Functional Partners:
OXB_2160
NRAMP family Mn2+ transporter.
 
  
 0.985
OXB_2158
Allophanate hydrolase subunit 1.
 
    0.873
OXB_2157
Allophanate hydrolase subunit 2.
 
    0.823
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.809
OXB_2155
Transcriptional regulator.
  
  
 0.778
OXB_0841
Transcriptional regulator.
  
    0.535
OXB_0848
Transcriptional regulator.
  
    0.535
OXB_0849
Transcriptional regulator.
  
    0.535
OXB_0867
Transcriptional regulator.
  
    0.535
OXB_2772
Transcriptional regulator, iclr.
  
    0.535
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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