Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OXB_2178Membrane protein. (206 aa)    
Predicted Functional Partners:
OXB_0337
Spore germination protein.
 
  
 0.751
OXB_1829
Stage V sporulation protein ad.
 
  
 0.736
OXB_0803
Spore germination protein, gera family.
 
  
 0.718
OXB_2535
Spore germination protein ka.
 
  
 0.690
OXB_1425
Hypothetical protein.
  
     0.665
OXB_1780
Spore germination protein xa.
 
  
 0.665
OXB_1830
Stage V sporulation protein ae.
 
  
 0.662
OXB_1131
Spore germination protein.
 
  
 0.652
OXB_1966
Sporulation sigma factor sige; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.648
OXB_1828
Stage V sporulation protein ac.
 
  
 0.630
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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