Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OXB_2181Phage infection protein. (723 aa)    
Predicted Functional Partners:
OXB_0583
ABC superfamily ATP binding cassette transporter, permease protein.
 
 
  0.700
OXB_2190
ABC transporter related protein; Belongs to the ABC transporter superfamily.
    
  0.622
ecfT
Cobalt ABC transporter permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
  0.612
OXB_2187
ABC-type sugar transport systems, permease components.
    
  0.594
OXB_1805
Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.
     
  0.589
OXB_2913
Metal transport system membrane protein.
    
  0.582
OXB_3369
Mntd.
    
  0.582
OXB_1684
ABC-2 type transporter.
  
 
  0.577
OXB_2513
ABC-type multidrug transport system, permease component.
  
 
  0.577
OXB_3434
Hypothetical protein.
  
 
  0.577
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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