Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OXB_2196Phenylacetic acid degradation-related protein. (139 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.851
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.661
OXB_1861
Hypothetical protein.
  
 0.641
OXB_2571
Alcohol dehydrogenase, zinc-binding protein.
  
 0.625
OXB_2778
Sorbitol dehydrogenase.
  
 0.625
OXB_2784
Alcohol dehydrogenase.
  
 0.625
OXB_3244
Alcohol dehydrogenase.
  
 0.625
OXB_0783
Hypothetical protein.
   
 0.617
OXB_3532
Fatty acid beta-hydroxylating cytochrome p450.
  
 0.609
OXB_0082
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.604
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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