Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_2240Hypothetical protein. (156 aa)    
Predicted Functional Partners:
OXB_0521
General stress protein 18.
 
  
 0.903
OXB_3410
Hypothetical protein.
 
  
 0.790
rsbW
Serine-protein kinase rsbw; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
  
 0.776
corA
Magnesium and cobalt transporter cora; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
  
    0.773
OXB_0465
RNA polymerase sigma factor sigb; Belongs to the sigma-70 factor family.
   
    0.769
OXB_1968
Ylmc/ymxh family sporulation protein.
    
  0.647
OXB_2450
Glucose starvation-inducible protein b.
  
    0.594
OXB_1266
ABC-type glycine betaine transport, periplasmic subunit.
  
    0.581
OXB_0044
Catalase related subgroup domain-containing protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.556
OXB_3101
Catalase related subgroup domain-containing.
  
  
 0.556
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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