Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_2437Conserved protein yuke; Belongs to the WXG100 family. (97 aa)    
Predicted Functional Partners:
OXB_2440
Yuka protein.
 
 
 0.977
OXB_2439
Hypothetical protein.
 
  
 0.962
OXB_2441
Bacteriophage spp1 adsorption protein yueb.
 
   
 0.899
OXB_2438
Ubiqutin-like protein yukd.
     
 0.895
OXB_2104
DNA translocase ftsk; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.812
OXB_3320
Cell division ftsk/spoiiie; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.812
OXB_2442
Hypothetical protein.
  
  
 0.749
OXB_0560
Membrane protein.
  
     0.672
OXB_1036
Hypothetical protein.
  
     0.623
OXB_3091
Hypothetical protein.
  
   
 0.605
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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