Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_2802Competence protein ComGF. (141 aa)    
Predicted Functional Partners:
OXB_2805
Competence protein ComGC.
  
  
 0.992
OXB_2892
DNA transport machinery protein.
  
  
 0.821
OXB_3118
Type IV pilus biogenesis protein pilc.
  
  
 0.821
OXB_2804
Comb operon protein.
       0.789
OXB_2803
Hypothetical protein.
       0.787
OXB_2893
Type II general secretion pathway e protein.
  
  
 0.786
OXB_3120
Type II secretory pathway, atpase pule/tfp pilus.
  
  
 0.786
OXB_2801
Hypothetical protein.
       0.773
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.749
OXB_3124
Hypothetical protein.
  
  
 0.730
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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