Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OXB_3301Hypothetical protein. (142 aa)    
Predicted Functional Partners:
OXB_3434
Hypothetical protein.
  
     0.719
OXB_3302
DNA ligase d.
       0.709
OXB_3455
Hypothetical protein.
  
     0.698
OXB_3435
ABC transporter ATP-binding protein.
  
     0.682
OXB_2656
Cytochrome aa3 quinol oxidase subunit iv.
  
     0.673
OXB_2809
Hypothetical protein.
  
     0.668
OXB_3066
Hypothetical protein.
  
     0.657
OXB_1594
Hypothetical protein.
  
     0.643
OXB_3232
Hypothetical protein.
  
     0.632
OXB_1586
Endo-beta-n-acetylglucosaminidase.
  
     0.599
Your Current Organism:
Bacillus sp. OxB1
NCBI taxonomy Id: 98228
Other names: B. sp. OxB-1, Bacillus sp. OxB-1
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