STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMDT1Single-pass membrane protein with aspartate rich tail 1. (107 aa)    
Predicted Functional Partners:
MCU
Calcium uniporter protein, mitochondrial isoform 1.
    
 0.986
MICU1
Mitochondrial calcium uptake 1.
    
 0.983
MCUB
Calcium uniporter regulatory subunit MCUb, mitochondrial isoform X1.
    
 0.964
MICU2
Calcium uptake protein 2, mitochondrial isoform X1.
    
 0.943
MICU3
Mitochondrial calcium uptake family member 3.
     
 0.830
MAIP1
Matrix AAA peptidase interacting protein 1.
     
 0.770
SUPT7L
STAGA complex 65 subunit gamma isoform b.
      
 0.768
SYDE2
Synapse defective Rho GTPase homolog 2.
      
 0.765
PCGF6
Polycomb group RING finger protein 6 isoform a.
      
 0.765
DCTN3
Dynactin subunit 3 isoform 1.
   
  
 0.731
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.