Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT1Synaptotagmin 1. (379 aa)    
Predicted Functional Partners:
VAMP2
V-SNARE coiled-coil homology domain-containing protein.
   
 0.980
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.972
STON2
Stonin-2; Adapter protein involved in endocytic machinery. Involved in the synaptic vesicle recycling. May facilitate clathrin-coated vesicle uncoating; Belongs to the Stoned B family.
   
 0.889
SLC17A7
Solute carrier family 17 member 7.
   
 
 0.884
SLC18A3
Solute carrier family 18 member A3.
     
 0.879
CPLX1
Complexin 1.
   
 0.879
STX1A
Syntaxin 1A; Belongs to the syntaxin family.
   
 
 0.857
SLC32A1
Vesicular inhibitory amino acid transporter.
   
 
 0.856
VAMP3
V-SNARE coiled-coil homology domain-containing protein.
    
 0.852
SLC18A2
MFS domain-containing protein.
     
 0.835
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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