Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXQ1Forkhead box Q1. (397 aa)    
Predicted Functional Partners:
A0A480SS62_PIG
Spindlin-1.
      
 0.830
SPIN1
Uncharacterized protein.
      
 0.773
LHFPL6
LHFPL tetraspan subfamily member 6 protein isoform X1.
      
 0.664
PRDM1
PR/SET domain 1.
    
 
 0.547
NCOA7
Nuclear receptor coactivator 7.
      
 0.532
ASTN2
Astrotactin 2.
    
 0.525
CRAMP1
Cramped chromatin regulator homolog 1.
    
 
 0.523
HRH1
Histamine receptor H1; Belongs to the G-protein coupled receptor 1 family.
      
 0.514
GMDS
GDP-mannose 4,6-dehydratase.
      
 0.497
LHFPL3
LHFPL tetraspan subfamily member 3.
      
 0.482
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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