Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4BPre-mRNA processing factor 4B. (1056 aa)    
Predicted Functional Partners:
PNN
Uncharacterized protein.
   
 
 0.960
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.885
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 
 0.874
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1.
    
 
 0.860
RBM25
RNA binding motif protein 25.
   
 
 0.834
PRPF31
U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1.
    
 
 0.832
ZC3H18
Zinc finger CCCH domain-containing protein 18 isoform X1.
   
   0.831
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.822
U2SURP
U2 snRNP-associated SURP motif-containing protein isoform X2.
   
  
 0.777
SON
SON DNA binding protein.
   
   0.776
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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