STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (340 aa)    
Predicted Functional Partners:
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.963
SNRNP25
Small nuclear ribonucleoprotein U11/U12 subunit 25.
     
 0.920
ZMAT5
Zinc finger matrin-type protein 5.
    
 0.870
SNRPF
Sm domain-containing protein.
    
 0.854
PDCD7
Programmed cell death 7.
   
 0.846
RNPC3
RNA binding region (RNP1, RRM) containing 3.
    
 0.842
SNRPG
Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.
    
 0.826
ZRSR2
U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2.
   
 0.818
PHF5A
PHD finger protein 5A.
    
 0.807
YBX1
Y-box binding protein 1.
    
 0.807
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.