Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C6orf52Chromosome 6 open reading frame 52. (158 aa)    
Predicted Functional Partners:
PRPF39
Pre-mRNA processing factor 39.
   
 
 0.835
CCDC84
Coiled-coil domain-containing protein 84.
      
 0.828
TOR1AIP2
Torsin 1A interacting protein 2.
    
 
 0.766
PTGES3
Prostaglandin E synthase 3.
    
 
 0.689
RBM25
RNA binding motif protein 25.
   
 
 0.659
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.656
AMPD3
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
   
  
 0.638
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.626
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.617
PHF5A
PHD finger protein 5A.
   
 0.600
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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