Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HDGFL1Uncharacterized protein. (208 aa)    
Predicted Functional Partners:
HDGFL2
HDGF like 2.
   
 
 0.567
PSIP1
PC4 and SFRS1 interacting protein 1.
    
   0.565
ALYREF
Aly/REF export factor.
   
 
 0.435
EIF2S2
Eukaryotic translation initiation factor 2 subunit beta.
   
   0.425
NAP1L1
Nucleosome assembly protein 1-like 1 isoform X1; Belongs to the nucleosome assembly protein (NAP) family.
   
 
 0.406
CDK13
Cyclin dependent kinase 13.
    
 
 0.406
CDK12
Cyclin dependent kinase 12.
    
 
 0.406
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.