Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZKSCAN4Zinc finger with KRAB and SCAN domains 4. (546 aa)    
Predicted Functional Partners:
GINS3
GINS complex subunit 3.
      
 0.761
ZNF503
Zinc finger protein 503.
      
 0.701
ZBTB3
BTB domain-containing protein.
   
 
 0.688
DYM
Dymeclin isoform 6.
      
 0.670
TRIM28
Tripartite motif containing 28.
   
 0.578
HEXIM1
HEXIM P-TEFb complex subunit 1.
    
 
 0.551
CREB3L3
cAMP responsive element binding protein 3 like 3.
    
 
 0.510
OTX1
Orthodenticle homeobox 1.
    
 
 0.508
TAF6L
TATA-box binding protein associated factor 6 like.
    
 0.461
PGBD1
PiggyBac transposable element-derived protein 1 isoform X1.
    
 
 0.445
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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