STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX16Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; Required for pre-mRNA splicing as component of the spliceosome. Contributes to pre-mRNA splicing after spliceosome formation and prior to the first transesterification reaction. Belongs to the DEAD box helicase family. DEAH subfamily. DDX16/PRP8 sub-subfamily. (1062 aa)    
Predicted Functional Partners:
GPKOW
G-patch domain and KOW motifs.
   
 0.996
CDC40
Pre-mRNA-processing factor 17.
   
 0.989
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1.
   
 0.980
CWC27
Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform 1.
   
 0.980
RNF113A
Ring finger protein 113A.
   
 0.979
PRPF8
Pre-mRNA processing factor 8.
   
 0.978
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.977
SF3B3
Splicing factor 3B subunit 3.
   
 0.976
SF3B2
Splicing factor 3B subunit 2 isoform X1.
   
 0.975
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.975
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.